Where blue comes from
Pick almost any blue living thing — a jay's feather, the wing of a morpho butterfly, the iris of a blue eye — and crush it. The blue goes away. What is left is brown, or gray, or a dull colorless smear. Do the same to a red rose or a yellow buttercup and the color survives the crushing, because in those the color is a pigment: a molecule that soaks up some wavelengths of daylight and hands the rest back to your eye. Grind the petal and you still have the molecule, so you still have the color.
The blue was never a molecule. It was a structure. Crushing it destroys the structure, and the color has nowhere left to live.
This is close to a rule in nature. Blue is almost never a pigment. It is almost always an arrangement of transparent, colorless material, built at a scale near the wavelength of light itself, shaped so that blue light in particular bounces back out and the rest passes through or is absorbed behind it.
There are two main ways to build it.
The morpho butterfly does it with layers. Each scale on its wing carries rows of microscopic ridges, and each ridge is a stack of thin shelves spaced a fraction of a micron apart. Light reflecting off the top shelf and light reflecting off the shelf below travel path lengths that differ by just the right amount to reinforce each other for blue and cancel for everything else. The wing is not painted blue; it is a machine for adding up blue light. Because the effect depends on the spacing and the angle, morpho blue shifts and flares as the wing turns — the giveaway of iridescent structural color. Wet the wing with a clear fluid that fills the gaps and changes the spacing, and the blue slides toward green, then fades. Let it dry and the blue comes back. The pigment that could do that does not exist.
Bird feathers do it differently, and more quietly. In a blue jay or a bluebird, the feather barbs are packed with a sponge of keratin threaded with air pockets, all roughly the same tiny size. That spongy medium scatters short blue wavelengths back at you from every direction at once, so the blue looks the same no matter where you stand — non-iridescent structural color. Underneath sits a layer of dark melanin that mops up whatever light slips past, deepening the blue by killing the competition. Grind that feather to powder and you scramble the sponge; the blue vanishes and the melanin's plain brown is all that remains. Nothing was lost but an arrangement.
Blue eyes are the same trick in flesh. There is no blue pigment in any human iris — none, in anyone. A blue iris is a nearly colorless front layer that scatters short wavelengths, backed by dark tissue; a brown iris is the same layer loaded with melanin that absorbs the light before it can scatter. The sky overhead is running the identical process on a planetary scale: air molecules scatter the sun's blue light in all directions, which is why the whole dome glows blue and the sun itself, robbed of that blue, sits a little yellow. Eye and sky are lit the same way.
Why should blue be so hard to make as a pigment and so easy to make as a structure? It comes down to energy. For a molecule to look blue it has to absorb the low-energy red and orange end of the spectrum and reflect only the high-energy blue. Absorbing low-energy light takes a large, sprawling, carefully tuned molecule — expensive to build and easy to get wrong. Reds and yellows are the opposite: they absorb the high-energy blue and green light, which small ordinary molecules do readily, which is why carotene and its relatives paint carrots and egg yolks and autumn leaves everywhere you look. Blue pigment sits at the far, difficult end of the chemistry. Life mostly declines to pay for it. Instead it reaches for glass and spacing and shadow, and builds the color out of shape.
A few true blue pigments do exist — indigo in its plant, the tuned blues that certain flowers coax out of red anthocyanins with the help of metal ions and the right acidity. They are the exceptions that prove how steep the climb is. For the rest of it — the jay, the morpho, the eye, the sky — the blue is not in the thing. It is in the way the thing is put together, and the light does the rest.